Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences
● The Royal Society
Preprints posted in the last 30 days, ranked by how well they match Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences's content profile, based on 15 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.
Pauchard, Y.; Buenzli, P. R.
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The osteocyte network in bone is believed to play an important role for how bone tissues sense and respond to mechanical stimulation. Yet, bone adaptation to mechanical loads is often conceptualised as a simple response to mechanical stimuli, such as Wolffs law, which is based on mechanical variables only and takes no account of the cellular basis of mechanosensation. Wolffs law presumes the existence of a reference mechanical stimulus, the mechanical setpoint, above which bone is consolidated, and under which bone is removed. In this paper, we develop a theory of bone tissue sensing and adaptation based on osteocytes to provide new understanding of the role played by osteocyte signals in mechanical adaptation. In this theory, the mechanical setpoint of Frosts mechanostat is explicitly embodied as osteocyte properties involved in mechanotransduction. The mechanical setpoint is allowed to adapt due to the replacement of osteocytes during remodelling, making the setpoint space and time dependent. We propose a mathematical model to implement this new theory of bone adapation and present numerical simulations of this model to explore how mechanobiological response curves (effective Wolffs laws) are modulated by setpoint adaptation during remodelling. By accounting for varying osteocyte populations within bone tissue, we explore bone adaptation under osteocyte disruptions, which is particularly relevant to age-related bone loss. Our model suggests that biological disruptions of remodelling balance cannot always be compensated by mechanical feedback, and that setpoint adaptation during remodelling may have significant observable consequences, such as hysteresis in bone response signatures that resemble lazy zones.
Sadhukhan, S.; Santra, D.
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Diffuse gliomas are deadly because the individual tumor cells invade - they travel far from the imageable mass, so it is impossible to remove the tumor completely. On the cellular level, glioma cells seem to be in either a "go" state (in which they do not divide) or a "grow" state (in which they do not migrate). We investigate what this tiny choice has to say about the large-scale speed of the invasion front and whether the implication is sufficiently strong to rule out the classical description of the Fisher-Kolmogorov-Petrovsky-Piskunov (Fisher-KPP) type, in which a single phenotype migrates and proliferates. We derive a two-phenotype reaction-diffusion model with density-dependent switching, and we prove the cooperative (quasi-monotone) structure and the associated comparison principle and study travelling-wave solutions of the model. A leading-edge linearization gives minimal front speed as minimizer of an explicit dispersion relation, and direct simulation verifies the predicted speed. In the experimentally relevant fast switching limit, we find a closed-form expression for the speed, that is, we obtain an effective Fisher-KPP equation with rescaled diffusivity and growth rate, with the fractions of the phenotypes. The "go-or-grow" (GoG) front can move at a maximum speed of half the Fisher speed for the same single-cell motility $D$ and proliferation rate $r$, which occurs only when the cells divide their time equally between the two phenotypes. This bound is directly testable: measurement of the front speed, plus independent determination of $D$ and $r$, discriminates the two hypotheses, and in the GoG case, yields recovery of the phenotype balance. We then extend the result to anisotropic (DTI-informed) invasion along white-matter tracts and discuss implications for understanding clinical measurements of growth rate.
Leung, C. F. A.; Kolomeisky, A.
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Microbes exhibit complex dynamic behavior as the result of a large number of biochemical processes, spatial and temporal interactions, environmental variations, and evolutionary pressure. Although significant progress has been achieved in understanding microbial ecological dynamics, multiple open questions remain, including the microscopic mechanisms of growth and the roles of nutrients and stochasticity. In this work, we present a minimal theoretical approach to clarify the link between consumption of resources by microbes and their growth. A stochastic model that accounts for a single microbial species consuming a single type of resource while growing via cell division is studied analytically and via Monte Carlo computer simulations. We identify three distinct dynamical regimes of microbial growth determined by the relative magnitudes of resource uptake and division rates and initial conditions. We also show that stochasticity influences the dynamic behavior when the amounts of microbes or resources are low. The model recovers Monod growth kinetics and provides a mechanistic interpretation of the Monod constant and maximal growth rate. The theoretical framework presented captures a wide spectrum of dynamic behaviors in microbial systems, providing a clearer microscopic picture to explain their underlying complex mechanisms.
Pavlov, V.; Salomone, T.; McKeon, B.
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Cetaceans reduce the net cost of sustained swimming through intermittent locomotion, alternating active fluking with unpowered gliding. The energy balance of this strategy is central to understanding survival rates, population sustainability, and the effects of anthropogenic and environmental pressures. While active-phase energetics have been characterized extensively, the glide phase remains largely unexplored. Here we derive the optimal glide duration (Topt) and the maximum glide duration beyond which energy savings vanish (Tzero) for three odontocetes spanning a 20-fold range in body mass, using high-fidelity CAD models and wall-modeled large eddy simulations. We show analytically that speed retention at Topt and mass-specific peak energy savings are both fully determined by the active-to-passive drag ratio, propulsive efficiency, and swimming speed, independently of body morphometry and drag coefficient, and are therefore invariant across species at any given speed. These passive-phase optima extend the known size-independent active-phase invariants to the glide phase, towards a scale-independent energetic framework for burst-and-glide locomotion in small cetaceans.
Kumar, R. S. P.; Ye, J.
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Background: Major soccer tournaments may temporarily change recreational soccer activity, community gatherings, and injury-prevention needs, but evidence for population-level emergency department (ED) injury patterns during these events is limited. Understanding whether ED-treated soccer injury burden changes during Men's FIFA World Cup periods may help inform surveillance readiness and prevention planning for future tournaments. Objective: To evaluate whether Men's FIFA World Cup tournament periods temporally coincided with changes in ED-treated soccer-coded injury burden in the United States and to assess the implications for public health surveillance and injury-prevention preparedness. Methods: We conducted a retrospective, repeated cross-sectional calendar-period analysis of publicly available national ED injury surveillance records from 1999 through 2025. Soccer-coded injuries were identified using product code 1267 in any available product field. The primary exposure was the set of official Men's FIFA World Cup tournament dates from 2002, 2006, 2010, 2014, 2018, and 2022. Tournament dates were compared with matched same-calendar dates in adjacent years, excluding dates that overlapped other FIFA World Cup tournament windows. The primary estimands were the mean daily difference and ratio in weighted national ED-treated soccer-coded injury estimates between tournament and matched-control periods. Results: The analytic cohort included 170,679 soccer-coded ED cases, corresponding to an estimated 5,366,681 ED-treated soccer-coded injuries nationally. Mean daily weighted estimates were 453.1 during Men's World Cup tournament dates and 384.1 during matched control dates. The absolute mean daily difference was 68.9 injuries per day (95% CI, -0.5 to 138.3), and the mean daily ratio was 1.18 (95% CI, 1.00 to 1.39). Tournament-specific estimates were heterogeneous, with a near-null estimate for the 2022 winter tournament and higher estimates for prior summer tournaments. Conclusions: Men's FIFA World Cup periods were associated with a modest, imprecise increase in mean daily ED-treated soccer-coded injury estimates, but the findings were heterogeneous and compatible with no difference to a moderate increase. These results should be interpreted as ecological and hypothesis-generating rather than causal. The primary implication is not that World Cup tournaments directly cause injuries, but that major soccer events provide a practical opportunity for real-time ED injury surveillance, targeted recreational soccer injury-prevention messaging, concussion awareness, and coordinated preparedness for community and fan-event injury patterns during future tournaments.
Boscaro, D.; Ludacka, U.; Sikorski, P.
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Accurate evaluation of extracellular matrix (ECM) mineralization at the nano-scale is essential for establishing relevant in vitro bone models. This is particularly important with the development and increased application of three-dimensional (3D) cell models for biological research. Transmission electron microscopy (TEM) allows to perform ultra-structural analysis of cells and ECM organization, but its application in in vitro bone models remains limited, due to the potential alteration or loss of the mineral phase during sample preparation. In this study, we compared two TEM sample preparation methods - the conventional chemical fixation and the anhydrous methods - to evaluate their ability to preserve the mineralized ECM in MC3T3-E1 cells cultured as monolayers and as alginate-encapsulated bone spheroids. Chemical fixation preserved cellular ultra-structure and collagen organization, allowing for detailed assessment of cells and ECM organization. Although mineral deposits were detected and their needle-like morphology assessed, characterization of more immature deposits was partially limited by the effects of uranyl acetate and the overall sample preparation process, which could lead to alteration or loss of less stable mineral phases. The anhydrous preparation method resulted in limited preservation of cellular and ECM morphology and did not allow reliable identification of mineral deposits. When applied to spheroids, the chemical fixation method preserved the 3D architecture, collagen-rich ECM and inner mineral deposits, confirming spheroids as a relevant model for bone studies. Overall, these results highlight the need for optimized sample preparation strategies that preserve both ultra-structure and mineral components for accurate nano-scale characterization of bone mineralization.
Song, H.; Hu, G.; Wu, X.; Zhang, X.; Li, J.
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Biomolecular condensates are widespread cellular self-assembled structures with essential functions. There are suggestions of condensates formed by different proteins being near criticality. However, systematic investigation of the criticality of condensates is absent, and critical exponents defining their universality class have not been found. Here, using long-time simulations, we show that condensates exhibit typical critical phenomena, including scale-free spatiotemporal correlations, critical slowing down, divergence of correlation length and dynamic scaling. From these scaling behaviors, a set of critical exponents is determined. Based on dynamic critical exponent, diverse condensates can be divided into two distinct universality classes, arising from differences in their molecular components and interaction types.
Zapf, A. J.; Dewey, G.; Ognyanova, K.; Baum, M.; Hanage, W. P.; Lipsitch, M.; Uslu, A. A.; Druckman, J. N.; Perlis, R.; Lazer, D.; Santillana, M.
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Compartmental models of infectious disease transmission make assumptions about human behaviors. Specifically, they parameterize interactions across population groups, assumed to have distinct epidemiologically-relevant behavioral patterns, primarily through contact matrices stratified by demographic variables such as age, gender, or socioeconomic status. Although such demographic characteristics are readily measurable, they may inadequately capture the social and psychological forces that govern protective behaviors. Drawing on 20 waves of a national survey conducted throughout the COVID-19 pandemic in the United States, we show that institutional trust - particularly trust in public health agencies, physicians, and hospitals - is a dominant predictor of protective behavior adoption. For mask wearing during periods of strongest pandemic activity, for example, institutional trust explains more behavioral variance across population groups than age, income, education, and partisan affiliation combined. In unadjusted analyses, the difference in protective behavior adoption between individuals with the highest and lowest trust in the CDC was four- to six-fold larger than the corresponding differences by age, income, or educational attainment, and exceeded the difference between Democratic and Republican respondents. This association was institutionally specific (e.g., the relationship attenuates for trust in banks), and behaviorally specific (e.g., trust in the CDC is associated with protective behaviors but not visiting a doctor). The latter suggests that trust modifies voluntary compliance with public health recommendations rather than access to or use of healthcare. We conclude that compartmental models of disease transmission would be substantially improved by incorporating institutional trust as a stratifying variable. We additionally offer a trust-integrated mathematical modeling framework and recommendations for the data infrastructure needed for its implementation.
de Carvalho, F. R.; Gavaia, P. J.
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Purpose The application of machine learning (ML) to osteoporosis prediction has expanded rapidly, yet no comprehensive meta-analysis has synthesized the discriminative performance of these models across all ML categories, data types, and validation strategies. This systematic review and meta-analysis aimed to evaluate the diagnostic and predictive accuracy of ML and deep learning models for osteoporosis prediction in adult populations. Methods Systematic searches of PubMed, Embase, Web of Science, and IEEE Xplore were conducted for studies published between January 2020 and February 2026. Studies developing, validating, or applying ML models for predicting osteoporosis, low bone mineral density, or osteoporotic fractures in adults were included. Methodological quality was assessed using the Prediction Model Risk of Bias Assessment Tool (PROBAST). Area under the receiver operating characteristic curve (AUC) values were pooled using random-effects meta-analysis with logit transformation. Subgroup analyses were performed by data type, ML category, external validation status, and population type. The review followed PRISMA 2020 guidelines. Results Thirty-three studies were included in the qualitative synthesis and 27 in the meta-analysis. The pooled AUC was 0.879 (95% CI: 0.853 0.901), with substantial heterogeneity (I = 99.5%). Imaging-based models outperformed clinical data models (AUC = 0.905 vs. 0.872). Deep learning achieved the highest pooled AUC (0.909), followed by ensemble methods (0.874) and traditional ML (0.840). Externally validated models showed lower performance than internally validated ones (AUC = 0.868 vs. 0.897). PROBAST assessment rated 32 of 33 studies (97.0%) as low risk of bias, though this proportion should be interpreted cautiously given that PROBAST was designed for traditional prediction models and may not fully capture ML-specific sources of bias. Egger's test indicated significant publication bias (p < 0.001). Explainable AI methods were employed in 60.6% of studies, identifying age, body weight, and alkaline phosphatase as the most frequent top predictive features. Conclusions Machine learning models demonstrate overall good discriminative performance for osteoporosis prediction, albeit with substantial heterogeneity across studies (I = 99.5%), and show potential as complementary screening tools, particularly in settings with limited DXA access. Deep learning models applied to imaging data and ensemble methods using clinical variables achieved the strongest subgroup estimates. However, extreme heterogeneity, evidence of publication bias, and limited prospective validation warrant cautious interpretation of the pooled estimate. Future research should prioritise multi-centre external validation, standardised reporting following TRIPOD+AI guidelines, and prospective clinical trials to establish real-world clinical impact.
Contri, A.; Francis, E. A.; Massing, A.; Rangamani, P.
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Cell shape and mechanics are intricately connected and tightly regulated by mechanochemical events including biochemical signaling, cytoskeletal remodeling, and plasma membrane mechanics. While experimental advances in microscopy have shed light on the intricate coordination involved in cell shape change in response to different cues, the ability to conduct three-dimensional simulations in realistic geometries remains an open computational challenge. In this work, we develop a finite-element framework that incorporates advection-diffusion-reaction equations coupled with equations governing the kinematics of a deformable interface representing the cell membrane. We applied this framework to three distinct coupled mechanochemical systems, each governed by geometric partial differential equations, resulting in large deformations of the interface. In all three examples, our simulations revealed the emergence of feedback between cellular signaling, cytoskeletal organization, and cell shape. In our first two sets of simulations, we observed that cell migration and neutrophil protrusion were regulated by membrane tension-mediated feedback. In our final application, we predicted shape changes of a dendritic spine starting from a realistic geometry, and found that the complex shape of the spine gives rise to localized regimes of actin cytoskeleton remodeling not previously observed with idealized geometries. Thus, our finite-element framework allows us to generate new mechanistic insights for biophysical problems.
Moshavernia, S.; Azarm, A.; Bagherzade, S.; Karimi, M.; Ghaem Maralani, H.; Moemenbellah-Fard, M. D.
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Background German cockroach (Blattella germanica) infestation is an important urban environmental health menace associated with food contamination, allergic disease, and reduced quality of life. Long-term control depends not only on professional pest management, but also on residents knowledge and preventive behaviors. This study assessed the knowledge, Health belief model (HBM) constructs, self-efficacy, and preventive practices related to German cockroach infestation among urban residents in Tehran, Iran. Methods In this cross-sectional study, 120 adults with professionally confirmed household German cockroach infestation were recruited from licensed pest-control companies in Tehran. Data were collated using a 39-item HBM-based questionnaire assessing knowledge, perceived susceptibility, perceived severity, perceived benefits, perceived barriers, self-efficacy, and preventive practices. Descriptive statistics, Pearson correlation, and multiple linear regression were performed. Results Participants demonstrated modest knowledge regarding German cockroach biology (mean score: 0.538) and moderate preventive practices (3.157). Preventive practices were positively correlated with knowledge (r = 0.256, P = 0.005), perceived benefits (r = 0.292, P = 0.001), and self-efficacy (r = 0.244, P = 0.007). Regression analysis showed that the model explained 17.3% of the variance in preventive practices (R2 = 0.173, P = 0.001). Knowledge ({beta} = 0.191, P = 0.036), perceived benefits ({beta} = 0.231, P = 0.010), and self-efficacy ({beta} = 0.229, P = 0.012) were significant predictors. Conclusions Urban residents with confirmed German cockroach infestation showed limited knowledge and moderate preventive behaviors. Knowledge, perceived benefits, and self-efficacy were independently associated with preventive practices and demonstrated modest predictive value. Interventions targeting these behavioral factors, alongside environmental and structural improvements, may enhance sustainable household cockroach control.
Swailem, M.; Dill, K.
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What drove nucleic acids (NA) to associate with proteins (PR) at the Origins of Life? We reason from polymer physics and the Central Dogma (CD) that the fitness value of cooperating through a division of labor - NA for replication fidelity and PR for functional fitness - is much higher than for either polymer alone. Our model shows a Pareto Front, where NA and PR can bootstrap each other to achieve autocatalytic cooperativity towards biology.
Klett, V. V.; Pippich, K.; Aksu, A.; Reinauer, F.; Milz, S.; Fichter, A. M.; Ritschl, L. M.; Reiser, J.; Werner, J.; Baumgartner, C.; von Bomhard, A.
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Introduction: Critical-sized bone defects cannot heal spontaneously, requiring additional, often burdensome, treatment. Thus, various synthetic substitute materials have been investigated regarding their treatment capacity. Poly-L-lactic acid (PLLA) and polyglycolic acid (PGA) have emerged as promising biodegradable scaffold materials. The addition of inorganic materials such as calcium carbonate (CC) has also been shown to be advantageous. This study investigates the effect on bone regeneration of PLLA-PGA-CC scaffolds in critical-sized bone defects over a two-year observation period using sheep as an animal model. Methods: Critical-sized mandible angle defects were created in twelve female merino sheep. Mandibular defects were reconstructed with PLLA-PGA-CC scaffolds in four sheep, while the remaining eight served as negative control (defects left empty). The scaffolds were manufactured using computer-aided design and manufacturing, incorporating an interconnected porous structure and fixated with polyether ether ketone cages. Bone regeneration was evaluated using computed tomography (CT) imaging at 3, 12, and 24 months postoperatively. Bone volume was assessed quantitatively. Additionally, a histological analysis was performed. Results: Surgical procedures were successful and without major complications. CT assessment showed more bone regeneration in the scaffold group (mean volume: 7,472 mm3) than in the control group (4,168 mm3, p = 0.1) at 24 months postoperatively. Resorption of the scaffolds and formation of compact lamellar bone tissue were confirmed by histological analysis. However, the osteoconductive properties of the scaffolds were limited, with only minimal ingrowth of bone tissue into the porous structure. In both groups, fibrous tissue infiltration and the formation of cyst-like cavities in the defect region were observed. Conclusion: PLLA-PGA-CC scaffolds were found to be biocompatible and enhanced bone regeneration compared to the control group. Due to fibrous tissue infiltration and the lack of osteoconductivity, the suitability of the material for critical-sized bone defect reconstruction is limited.
Li, C.; Kleiven, S.; Zhou, Z.
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Acute subdural hematoma (ASDH) is a prevalent injury with high mortality and morbidity, often resulting from bridging vein (BV) disruption secondary to cortical relative motion. As a thin membrane enveloping the brain surface and anchoring BVs, the pia mater is hypothesized to play a critical mechanical role in cortical response and hence ASDH pathogenesis. Finite element (FE) head models are valuable tools to predict ASDH occurrence during impacts. However, the pia mater is often represented as an elastic material in existing FE head models, despite experimental evidence reporting its nonlinear mechanical behavior. In this study, both linear (Young's modulus of 11.5 MPa) and nonlinear (the stress-strain curve derived from pial tension tests) material models of the pia mater were implemented in one FE head model. The models were subjected to three experimental impact loadings, one of which was known to cause ASDH and two of which were not. Results demonstrated that, across all simulated impacts, the model with nonlinear pia mater properties predicted larger cortical displacements and BV responses than the linear model. For the impact with known ASDH occurrence, the predicted BV strain was 0.17 for the nonlinear model and 0.094 for the linear model, with only the former approaching the reported rupture strain range of the BV-superior sagittal sinus complex (0.29 {+/-} 0.13). These findings verified the mechanical importance of the pia mater in cortical responses and hence the prediction of ASDH, suggesting that conventional linear pia modeling might over-constrain cortical motion, leading to underestimation of BV strain and ASDH risk. The current study supported the adoption of experimentally derived nonlinear pia mater properties in FE head models to improve the reliability of ASDH prediction.
Stenton, M.; Henderson, S. R.
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Hand eczema has been described as having an increased prevalence in persons with increased frequency of hand washing. This study investigated the differences in the hand microbiome of persons with and without a history of eczema and secondly the sensitivity of these microbes to commercial liquid soap as a potential trigger for eczema flares. The study identified Staphylococcus to be the most populus genus on the hands in both groups, but the distribution of species was different. Additionally, there was no difference in the number of soaps that produced zones of inhibition but there were some differences in the overall sensitivity to the different soaps tested. Overall, it was determined that liquid soap can cause bactericidal effects on some species of the commensal microbiome, but further work is required to determine if this could be the cause of hand eczema.
Wang, C.; Berardi, M.; Martin, S.; Brown, C.; Soltani, Z.; Keko, M.; Rosa-Caldwell, M. E.; Mortreux, M.; Rutkove, S.; Bailey, S.; Alkalay, R. A.
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BackgroundPalliative radiation therapy (RT) for metastatic spine disease significantly increases the risk of vertebral fractures. However, the temporal mechanisms underlying radiation-induced vertebral bone fragility remain poorly understood. ObjectiveTo evaluate the longitudinal effects of a single high-dose irradiation, simulating palliative RT, on vertebral bone mechanical, architectural, and compositional properties in a healthy, skeletally mature rat model. MethodsThirty-one male Sprague Dawley rats received a single 15 Gy lumbar spine irradiation (IR). L4 vertebrae were assessed across all groups (irradiation: 7, 14, and 28 days post-IR, controls: at 0 and 28 days post-IR) for compressive strength and stiffness, micro-CT-derived bone composition and trabecular indices, serum bone turnover markers (NTX and BAP) and advanced glycation endproducts (AGEs). ResultsIrradiation induced progressive deterioration of vertebral bone mechanical properties, with strength decreasing up to 44% and stiffness up to 38% by 28 days post-IR, compared to 0- day controls. Trabecular bone exhibited reduced BMD, BV/TV, and Tb.N with increased Tb.Sp, a shift toward a more rod-like structure. Early post-IR changes suggested disrupted bone remodeling, characterized by elevated NTX and AGEs, but decreased BAP. Multivariable regression demonstrated that Tb.Th and AGEs were independent predictors of stiffness, collectively explaining 61% of its variance. DiscussionHigh-dose irradiation induces sustained temporal degradation of vertebral mechanical properties driven by both trabecular architectural deterioration and alterations in bone matrix quality. Measures of bone composition and non-enzymatic bone turnover suggest this early damage was driven by disruption of bone cellular homeostasis, favoring increased resorption over formation. These findings support that radiation impairs both structural integrity and pre-yield mechanical behavior, providing mechanistic insight into the elevated fracture risk observed clinically after irradiation for metastatic spine disease. Lay summaryThis study used a rat model to mimic palliative radiation therapy for cancer that has spread to the spine and evaluated the changes in bone quality up to 28 days post-therapy. We found that irradiation progressively weakened the structural integrity and composition of the bones in the spine and disrupted the normal balance of bone breakdown and repair, leading to greater bone loss and fragility. Our findings provide insight into the increased risk of fractures observed in patients receiving radiation therapy to the spine and may support efforts to better protect bone health during treatment.
Ali, A. F.; Inan, N.; Laukkonen, R.; Mikheenko, P.
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We develop a theoretical proposal linking vacuum stability and brain dynamics through superconductivity-inspired coherence, symmetry reduction, and the thermodynamic stabilization of low-entropy regimes. We take an unbroken SU(3) structure as a candidate stable residue of the low-temperature vacuum. At the neural level, we formulate a coarse-grained analog in which a two-fluid model with dissipative and coherence-supporting components describes brain dynamics. Specifically, the coherence-supporting component is proposed as a possible basis for the efficient binding and integration required to sustain a stable, unified conscious state. The proposal offers a common geometric language for relating physics and neuroscience with falsifiable signatures in coherence and state-dependent transitions. The main technical contribution is a computational algebraic model of conscious-state dynamics, where neural data are mapped to reconstructed state trajectories. Effective generators are inferred from those trajectories, and the two-fluid split is tested as a Cartan-root decomposition of su(3), with a rank-two commuting sector for coherence-preserving balance and six root directions for state transitions. This structure can be tested on neural data and contrasted with alternative dynamical models.
Yadav, A.; Sneppen, K.; Mitarai, N.
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Phages must locate and bind to bacterial surface receptors to initiate infection. Their tail fiber configuration critically influences this process. We develop a stochastic model describing surface search as a renewal process, incorporating attachment, detachment, and target-finding steps. Using both numerical simulations and analytical calculations, we quantify how tail fiber number, attachment-detachment rates, and geometric constraints impact the mean and the distribution of time to successful adsorption. Notably, the search efficiency shows a nonmonotonic dependence on tail fibers number, governed by a trade-off between binding stability and diffusion-mediated mobility. This optimum shifts depending on the effective bacterial density, target radius, and fiber reach. Short fiber reach imposes severe geometric constraints, reducing mobility at high tail fiber counts and leading to performance degradation. Our findings suggest that phage adsorption strategies are shaped by a balance between anchoring and exploration, with evolutionary implications for tail fiber design and infection efficiency.
Karagiannis, J.
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The relationship between genotypic and phenotypic variation is determined by the complex interaction of genetic and environmental factors. While statistical methods capable of detecting such interactions exist, an axiomatic mathematical framework that seamlessly describes the combined effects of genetic modifications and environmental exposures on a common scale is lacking. In this report, buffering concepts are used to construct a measurement system that enables the geometric representation of both gene-by-gene and gene-by-environment interactions on the extended complex plane (i.e., as projections on the Riemann sphere). In this manner, any such interaction, or combination thereof, can be precisely defined and quantified as the deviation from the neutral value calculated through the applicable complex transformation. When thus conceptualized, the framework's parameterization defines the "state space" of a given measurable phenotype along both the real and imaginary dimensions, thus establishing an unambiguous and broadly applicable method for determining the phenotypic value expected upon combinatorial changes in genetic and/or environmental variables. Remarkably, by applying these methods, it is possible to quantify the effects of any gene-by-environment interaction using the equation, AGxE=Im([z]obs*zexp)/2, where zobs and zexp are complex numbers representing the observed and expected phenotypes of a given genotype expressed in terms of the buffering parameters, and b.
Mironov, S.
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Reaction diffusion (RD) systems play a fundamental role in numerous biochemical and biophysical processes. Here, we present a novel analytical framework for solving RD equations by applying the Wentzel Kramers Brillouin Jeffreys (WKBJ) formalism to Ca nanodomains generated by individual membrane channels, a widely used paradigm for intracellular Ca signaling. Previous models have primarily focused on stationary Ca nanodomains while neglecting diffusion and saturation of intracellular Ca buffers and sensors. In contrast, we derive analytical solutions without these simplifying assumptions. Our analysis demonstrates that sustained Ca influx generates continuously expanding distributions of free Ca, whereas Ca bound buffers and sensors propagate as traveling waves. These predictions are supported experimentally by measurements of one-dimensional fluorescence profiles produced by single-channel activity and two-dimensional profiles generated by whole cell Ca currents. The analytical framework developed here readily extends Michaelis Menten type kinetics to reaction diffusion systems and may therefore be broadly applicable to biochemical and biophysical processes in which diffusion cannot be neglected.